chr7:150649738:C>T Detail (hg19) (KCNH2)

Information

Genome

Assembly Position
hg19 chr7:150,649,738-150,649,738
hg38 chr7:150,952,650-150,952,650 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000238.3:c.1332G>A NP_000229.1:p.Glu444=
NM_172057.2:c.312G>A NP_742054.1:p.Glu104=
Ensemble ENST00000262186.10:c.1332G>A ENST00000262186.10:p.Glu444=
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Benign Likely benign
Review star
Show details
Links
Type Database ID Link
Gene MIM 152427 OMIM
HGNC 6251 HGNC
Ensembl ENSG00000055118 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Benign 2024-02-05 criteria provided, multiple submitters, no conflicts long QT syndrome germline Detail
Benign Likely benign 2018-08-30 criteria provided, multiple submitters, no conflicts long QT syndrome 2 germline unknown Detail
Benign 2015-08-13 criteria provided, single submitter germline Detail
Benign no assertion criteria provided not specified germline Detail
Benign 2023-10-10 criteria provided, multiple submitters, no conflicts not provided germline Detail
Benign 2018-03-16 criteria provided, single submitter Cardiac arrhythmia germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.006 cardiac event Excitement, exercises, and stress appear to be the triggers for developing cardi... BeFree 12442276 Detail
0.007 cardiac event Excitement, exercises, and stress appear to be the triggers for developing cardi... BeFree 12442276 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000238.4(KCNH2):c.1332G>A (p.Glu444=) AND Long QT syndrome ClinVar Detail
NM_000238.4(KCNH2):c.1332G>A (p.Glu444=) AND Long QT syndrome 2 ClinVar Detail
NM_000238.4(KCNH2):c.1332G>A (p.Glu444=) AND Cardiovascular phenotype ClinVar Detail
NM_000238.4(KCNH2):c.1332G>A (p.Glu444=) AND not specified ClinVar Detail
NM_000238.4(KCNH2):c.1332G>A (p.Glu444=) AND not provided ClinVar Detail
NM_000238.4(KCNH2):c.1332G>A (p.Glu444=) AND Cardiac arrhythmia ClinVar Detail
Excitement, exercises, and stress appear to be the triggers for developing cardiac events (syncope, ... DisGeNET Detail
Excitement, exercises, and stress appear to be the triggers for developing cardiac events (syncope, ... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs9770044 dbSNP
Genome
hg19
Position
chr7:150,649,738-150,649,738
Variant Type
snv
Reference Allele
C
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8654
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121398
Allele Counts in All Race (ExAC)
415
Heterozygous Counts in All Race (ExAC)
407
Homozygous Counts in All Race (ExAC)
4
Allele Frequency in All Race (ExAC)
0.0034185077184138123
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